Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQSLSNIIINLQAN---KDLLLQQDNEVDRIKSILPLVVARNSIIETLGRNPVWGISLTDDVNNLKIDNQLVTEVIPFD--WNNETLYLCYFSDLESSNSPSEMGISFQLVNIFSLS
5A0V Chain:A ((219-322))
--RDISNVLRQVFANARKRIIVASFASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPDSEVVLVCTGSQGEPMAALSRMA------------
General information:
TITO was launched using:
RESULT:
Template:
5A0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39712 for 696 contacts (-57.1/contact) +
2D Compatibility (PS) -10085 + (NN) 891 + (LL) 1472
1D Compatibility (HY) -6000 + (ID) 1250
Total energy: -54684.0 ( -78.57 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_5A0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A0V-query.scw
PDB file :
Tito_Scwrl_5A0V.pdb
: