Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKTGWGILGAVAAFTGYAYWSTKHLTVTNYEIVSDKIPAEWDGATFIQLSDLHSASFGLYNNPLLSIVNELAPDAVFLTGDMIDGDESP-------YVAMAVVRKLAKEFPVFYVSGNHEGRSAFYEDFKADMEKHHVAVLENER---------YFLKKDGAAIMVAGVQDPRFVKENWAEKELPKEEWEEAALKEALDDATANLSSDYFTILLAHRP-----------------EFWPLYQAYPIDLVLSGHAHGGQFRLPLTEGLFAPGQGFMPKWTAGIHRAGGKALVVSRGLGNVTKLPRLFNDPE------------VIRITLKAKGDA-------------------------------- |
| 4KBP Chain:A ((121-432)) | -------------------------------------QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPK-KGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLS-----------SYSAYGRGTPQYTWLKKELRKVKRSETP--WLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHA----YERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KBP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102994 for 1775 contacts (-58.0/contact) +
2D Compatibility (PS) -25046 + (NN) -13737 + (LL) 3740
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -146437.0 ( -82.50 by residue)
QMean score : 0.345
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