Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQADVVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNGEYYPLVSFHAHIPAEHLLDGYIYPIEWHFVHEKPDGTTLVMSAWMDIDNTNNIEFKNLPTYFPEVFADFETEREIT--LDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIG-NTSRPVQDLNGREITFYN
4COQ Chain:B ((26-245))
-------WGYSGSIGPEHWGDLSPEYLMCKIGKNQSPIDINSADAVKACLAPVSVYYVSDAKYVVNNGHTIKVVMGGRGY-VVVDGKRFYLKQFHFHAPSEHTVNGKHYPFEAHFVHLDKNGNITVLGVFFKV-GKENPELEKVWRVMPE---EPGQKRHLTARIDPEKLLPENRDYYRYSGSLTTPPCSEGVRWIVFKEPVEMSREQLEKFRKVMGFDNNRPVQPLNARKV----
General information:
TITO was launched using:
RESULT:
Template:
4COQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84467 for 1700 contacts (-49.7/contact) +
2D Compatibility (PS) -23049 + (NN) -4732 + (LL) 1276
1D Compatibility (HY) -14400 + (ID) 3800
Total energy: -129172.0 ( -75.98 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4COQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4COQ-query.scw
PDB file :
Tito_Scwrl_4COQ.pdb
: