Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
3ZXN Chain:B ((5-116))
--VPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKN----
General information:
TITO was launched using:
RESULT:
Template:
3ZXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128557 for 820 contacts (-156.8/contact) +
2D Compatibility (PS) -12160 + (NN) -5896 + (LL) 232
1D Compatibility (HY) -16800 + (ID) 2150
Total energy: -165331.0 ( -201.62 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_3ZXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZXN-query.scw
PDB file :
Tito_Scwrl_3ZXN.pdb
: