Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PRCPNLDEPTVGIDPELRKTIWEELDDLKANGKCILVTTHVMDEAEK-CDRLAMIRNGEIIAVGTPQELSSKTSSGKLEDAFLEFGGKH
1VPL Chain:A ((165-249))
PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV----
General information:
TITO was launched using:
RESULT:
Template:
1VPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18115 for 520 contacts (-34.8/contact) +
2D Compatibility (PS) -9249 + (NN) -3471 + (LL) -236
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -37121.0 ( -71.39 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1VPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPL-query.scw
PDB file :
Tito_Scwrl_1VPL.pdb
: