Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPFIVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFL----------LARKFGQTRFLRFISGHKQIKRVMEW------IDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVY-----------QFILALV-----GGKLIKVFAISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK-----
4MB0 Chain:A ((9-261))
PRYWSLYYREKIIEGMEKGMTAKAGLIAHGRGEAFDYLIGE-RTIEPAERAMRAAVAKLLLAENPVVSV--NGNVAALVPKETIELARALNAKLEINLFYRTEDRVKAIAEELRKYDPEIELLGINPTKRIPGLEHERGKVDENGIWKADVVVV-PLEDGDRTEALVRMGKFVITIDLNPLSRSARMADITIVDNIVRAYPRMTELAREMKDYSRGELIRIIEEYDNGKTLNDVLLHIRDRLTKLAEGGIWRKKQLD
General information:
TITO was launched using:
RESULT:
Template:
4MB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -250311 for 1520 contacts (-164.7/contact) +
2D Compatibility (PS) -20218 + (NN) -4544 + (LL) 684
1D Compatibility (HY) -2800 + (ID) 1700
Total energy: -278889.0 ( -183.48 by residue)
QMean score : 0.232
(partial model without unconserved sides chains):
PDB file :
Tito_4MB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MB0-query.scw
PDB file :
Tito_Scwrl_4MB0.pdb
: