Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQD
4PZK Chain:A ((2-156))
-GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGL-------------
General information:
TITO was launched using:
RESULT:
Template:
4PZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90385 for 1166 contacts (-77.5/contact) +
2D Compatibility (PS) -17074 + (NN) -9214 + (LL) 948
1D Compatibility (HY) -19600 + (ID) 5400
Total energy: -140725.0 ( -120.69 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4PZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PZK-query.scw
PDB file :
Tito_Scwrl_4PZK.pdb
: