Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIPYRLNNKGGLIVTLPGKDETKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIEGEYCTIETSAGDLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRALGIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENNLELPHTTHFLISNNEEIGYGGNSNIPAETVEYLAVDMGALGDGQTSDEYTVSICAKDGSGPYHLGLRKHLVELAKKNNIDYKVDIYPFYASDASAAINAGNDIIHGLIGPGIDASHAYERTHRDSLYHTEKLVYAYLFSNILK |
| 2GRE Chain:A ((4-348)) | -----HTKETMELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRNNKGALILTVKGKNDAQHRLLTAHVDTLGAMVKEIKPDGRLSLSMIGGFRWNSVEGEYCEIETSSGKTYTGTILMH-------------------IEVRIDERVFSADEVRELGIEVGDFVSFDPRVQITESGYIKSRHLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNE----GGNSNIPEETVEYLAVDMGALGDG--SDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYKVDIYPYY--------RAGFDVKHALIGAGIDSSHAFERTHESSIAHTEALVYAYVMSNLIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161496 for 2611 contacts (-61.9/contact) +
2D Compatibility (PS) -34568 + (NN) -22334 + (LL) 2104
1D Compatibility (HY) -36800 + (ID) 10900
Total energy: -263994.0 ( -101.11 by residue)
QMean score : 0.573
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