Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNIVMGIDEPTEKISVKKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIHWKLYELEEKFKDSSFFRCSKSMILNIEWIEKIAPGFHGKFEAKLFNREKVIISRQYAKVLKQKLNMGGKRK
3D6W Chain:A ((3-109))
---------------------------------------SVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTHSTFLLSMDNGERVPVSQSYASYFRKLLGF-----
General information:
TITO was launched using:
RESULT:
Template:
3D6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87792 for 756 contacts (-116.1/contact) +
2D Compatibility (PS) -11293 + (NN) 1069 + (LL) 2240
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -105226.0 ( -139.19 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3D6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6W-query.scw
PDB file :
Tito_Scwrl_3D6W.pdb
: