Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASD-VTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRK--FPTMWEAVK-VSRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
3T0J Chain:A ((10-263))
----ALYGFAQGLIQEAGIRIKQLMEQNLT------PNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDT-SKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHAKVGEGAYRGSQPLKPLN-DSNLRQSIIGINPNWLTKPILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPNSILVGNRGLHQEISNDYL-
General information:
TITO was launched using:
RESULT:
Template:
3T0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171979 for 2111 contacts (-81.5/contact) +
2D Compatibility (PS) -26626 + (NN) -11677 + (LL) 36
1D Compatibility (HY) -18800 + (ID) 4650
Total energy: -233696.0 ( -110.70 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3T0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T0J-query.scw
PDB file :
Tito_Scwrl_3T0J.pdb
: