Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAEILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIF-DSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQSFNMKTIQKHYNNLTDDEKQILTDACKICLLAGEKVKLVNGGISNIKITTPYDLKVANAIVQERINS
4JIS Chain:A ((3-233))
MIYAEILA-----------MPKQFLPLNKRPIIIHTVEKFLLNDRFDKILIVSPKEWINHTKDILKKFIGQDDRLVVVEGGSDRNESIMSGIRYIEKEFGIQDNDVIITHDSVRPFLTHRIIDENIDAVLQYGAVDTVISAIDTIIASEDQEFISDIPVRDNMYQGQTPQSFRISKLVELYNKLSDEQKAVLTDACKICSLAGEKVKLVRGEVFNIKVTTPYDLKVANAIL------
General information:
TITO was launched using:
RESULT:
Template:
4JIS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119036 for 1744 contacts (-68.3/contact) +
2D Compatibility (PS) -23271 + (NN) -8151 + (LL) 188
1D Compatibility (HY) -31600 + (ID) 7450
Total energy: -189320.0 ( -108.56 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4JIS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JIS-query.scw
PDB file :
Tito_Scwrl_4JIS.pdb
: