Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDILY----KKT-QA----V-----EYFQEMIDTPGEFVQHR------QLYSALTVTAADASVIAILQSVTEKKQTFSPM----FASIFAKPVIGIVTKVDLAESDKDIER-AERELRMAG-AKHIFYISSVEETGIEELRAYLED
3IEV Chain:A ((11-177))
-GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL-
General information:
TITO was launched using:
RESULT:
Template:
3IEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70987 for 1013 contacts (-70.1/contact) +
2D Compatibility (PS) -15403 + (NN) -2608 + (LL) 100
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -96898.0 ( -95.65 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3IEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEV-query.scw
PDB file :
Tito_Scwrl_3IEV.pdb
: