Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
1S8N Chain:A ((11-200))
--AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAP-IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLG
General information:
TITO was launched using:
RESULT:
Template:
1S8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65530 for 1556 contacts (-42.1/contact) +
2D Compatibility (PS) -20966 + (NN) -12716 + (LL) 72
1D Compatibility (HY) -17200 + (ID) 4000
Total energy: -120340.0 ( -77.34 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1S8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S8N-query.scw
PDB file :
Tito_Scwrl_1S8N.pdb
: