Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSS-----KHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDTTFDWFLDYDEVDYVIEGRLDVVIDGRTVSAGPGEIIFIPKGSQIKFSVTGEARFIYVTYPADWQS
4AXO Chain:B ((15-141))
-------------------------TVDFVRNKDISGITSIKLPTVKVSESDRLDTGNPSDVVYTKDLFTLEESPRLGCGMMEMKETTFDWTLNYDEIDYVIDGTLDIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYVTYPADWAS
General information:
TITO was launched using:
RESULT:
Template:
4AXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59673 for 838 contacts (-71.2/contact) +
2D Compatibility (PS) -13431 + (NN) -6154 + (LL) 2604
1D Compatibility (HY) -15600 + (ID) 4600
Total energy: -96854.0 ( -115.58 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4AXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AXO-query.scw
PDB file :
Tito_Scwrl_4AXO.pdb
: