Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3OIO Chain:A ((4-106))
----------------------------------------------------------------------------GSQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPREER----
General information:
TITO was launched using:
RESULT:
Template:
3OIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57687 for 732 contacts (-78.8/contact) +
2D Compatibility (PS) -10895 + (NN) -5820 + (LL) 4944
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -75158.0 ( -102.67 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_3OIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIO-query.scw
PDB file :
Tito_Scwrl_3OIO.pdb
: