Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELI--KDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLE--------------------VKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYELVDMTTVVIVGNKETYVKNGKMITPRGYSL
2ZVB Chain:A ((3-260))
ELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEER--GLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREAEAGMLTTVVIGNRQSRFYEGTFLTPRG---
General information:
TITO was launched using:
RESULT:
Template:
2ZVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190582 for 1943 contacts (-98.1/contact) +
2D Compatibility (PS) -26919 + (NN) -17732 + (LL) 20
1D Compatibility (HY) -18800 + (ID) 5400
Total energy: -259413.0 ( -133.51 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2ZVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZVB-query.scw
PDB file :
Tito_Scwrl_2ZVB.pdb
: