Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIRIIGSVGSGKTTLAKKLSEWYQIDYFETDRIVWKRE---GIEVR------------RTDIEKIAVLNKIL------QQENWIIEGVHLEAW----VNESFDQADVIIFLNLPKKQIRSQLIKRQIKQLLRLEAAHYQVKLNMLNKMFYWDDLFDQRTKPLIAEKMAQTPTKWLVVTEKTALQEIQKKLLQIISSRDIL
1UKZ Chain:A ((16-201))
SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSG--RSDDNIES-------IKKRFNTFKETSMPVIEYF--ETKSKVVRVRCDRSVEDVYKDVQDAIRD----
General information:
TITO was launched using:
RESULT:
Template:
1UKZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66108 for 1204 contacts (-54.9/contact) +
2D Compatibility (PS) -17504 + (NN) -8425 + (LL) 1560
1D Compatibility (HY) -7600 + (ID) 1350
Total energy: -99427.0 ( -82.58 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1UKZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UKZ-query.scw
PDB file :
Tito_Scwrl_1UKZ.pdb
: