Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKVTARIKGE
1OYR Chain:B ((1-241))
MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDSL-------
General information:
TITO was launched using:
RESULT:
Template:
1OYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136317 for 2026 contacts (-67.3/contact) +
2D Compatibility (PS) -26056 + (NN) -9032 + (LL) 496
1D Compatibility (HY) -26000 + (ID) 8550
Total energy: -205459.0 ( -101.41 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1OYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OYR-query.scw
PDB file :
Tito_Scwrl_1OYR.pdb
: