Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENKYDDKHFFEQYSQMPRSKEGLQAAGEWHEFKKLLPDFHQKVVLDLGCGFGWHCIYAAEQGAKKVVGVDLSARMLTEAKHKTTSPIVHYERRAMENIDIEPETYDIVLSSLALHYVASFNDICQKVNTNLITGGSFVFSVEHPIFTADGRQDWFTDEAGNKLHWPVDRYFNESIRTSHFLGEDVQKYHRTLTTYIQTLLKNGFQINSIIEPEPAPELKDLPEMQDEYRRPMMLIISATKN
3G5L Chain:A ((25-244))
----------------------EGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPMMLLISATK-
General information:
TITO was launched using:
RESULT:
Template:
3G5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111542 for 1708 contacts (-65.3/contact) +
2D Compatibility (PS) -23490 + (NN) -12735 + (LL) 1204
1D Compatibility (HY) -29600 + (ID) 9150
Total energy: -185313.0 ( -108.50 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3G5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G5L-query.scw
PDB file :
Tito_Scwrl_3G5L.pdb
: