Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVELGVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQTSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILMAKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSFTEQGNNIKRVILGEKIGTTVRGKK
1Z9D Chain:A ((4-241))
--EPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAG-NIQRVVFGEHIGTTVSNK-
General information:
TITO was launched using:
RESULT:
Template:
1Z9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166525 for 1991 contacts (-83.6/contact) +
2D Compatibility (PS) -26405 + (NN) -12617 + (LL) 116
1D Compatibility (HY) -24400 + (ID) 7350
Total energy: -237181.0 ( -119.13 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1Z9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z9D-query.scw
PDB file :
Tito_Scwrl_1Z9D.pdb
: