Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV
4GFQ Chain:A ((25-209))
MGQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV
General information:
TITO was launched using:
RESULT:
Template:
4GFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47650 for 1317 contacts (-36.2/contact) +
2D Compatibility (PS) -20466 + (NN) -10948 + (LL) 0
1D Compatibility (HY) -19600 + (ID) 6100
Total energy: -104764.0 ( -79.55 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_4GFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFQ-query.scw
PDB file :
Tito_Scwrl_4GFQ.pdb
: