Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMD--ENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF--
1IB8 Chain:A ((1-164))
GSGVDAIATIVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKARLAVKLLE
General information:
TITO was launched using:
RESULT:
Template:
1IB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60926 for 974 contacts (-62.6/contact) +
2D Compatibility (PS) -16820 + (NN) -10492 + (LL) 176
1D Compatibility (HY) -18800 + (ID) 3200
Total energy: -110062.0 ( -113.00 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_1IB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IB8-query.scw
PDB file :
Tito_Scwrl_1IB8.pdb
: