Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDP-SQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSKEE--QATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKK--QMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WO7 Chain:B ((3-245))
------------------------DPITSESEGIWNHFFVYPMSWLITTVANLLNGSYGLSIIIVTILIRLALLPLTLKQQKSMRAMQ----VIRPEMEAIQKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPMA-GCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWFDLGQPDYILPFVAGITTYFQFKMTMS--------QMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQTYFI----VVKAPPLEVLE-----------------
General information:
TITO was launched using:
RESULT:
Template:
3WO7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167567 for 1489 contacts (-112.5/contact) +
2D Compatibility (PS) -23081 + (NN) -8150 + (LL) 5352
1D Compatibility (HY) -31600 + (ID) 4700
Total energy: -229746.0 ( -154.30 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_3WO7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WO7-query.scw
PDB file :
Tito_Scwrl_3WO7.pdb
: