Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPTQTDFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVSDGNHILEDAFAFMEQALFRPNVANDAFNEETLTREKENLKSSLEGIYDDKIRFASKRLVEEMFRDDE-FRFGSAGVLEDIDAITAKDLYEYYLQFIAEDTIEIFICGDVTKEEVMPLIEKMAFSPRPERKG-IFYTKEAPKEVRVIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAGIDEVNYEQALKIIEEQVVAMKQGNFTDDELNQTKEMLINQLLETNDQAQGLIELVY-NNVLRDANLDLENWIAKIKQATKEEVVAAINKIKPDTIYFLSKGGEELHGKNHI |
| 3D3Y Chain:A ((9-418)) | ---------VKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQD-SQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFL------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D3Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169480 for 3262 contacts (-52.0/contact) +
2D Compatibility (PS) -44834 + (NN) -27691 + (LL) 880
1D Compatibility (HY) -40400 + (ID) 8050
Total energy: -289575.0 ( -88.77 by residue)
QMean score : 0.649
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