Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN
2HVW Chain:A ((37-178))
-NRLSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQHDVPR-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99389 for 1131 contacts (-87.9/contact) +
2D Compatibility (PS) -15120 + (NN) -4281 + (LL) 3616
1D Compatibility (HY) -14800 + (ID) 3550
Total energy: -133524.0 ( -118.06 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2HVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVW-query.scw
PDB file :
Tito_Scwrl_2HVW.pdb
: