Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERNEVLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKARITALLHDYAKYYDDDKARKIIEDEGYD-PRLLSFHHSLWHAPVGAYLAEKEFGITDT-EILEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLDEAMLFALSNTITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY
2O08 Chain:A ((2-187))
MNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIRE-KLSQQDILFYGDELLHAPCGAYYVREEVGIE-DEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ-----
General information:
TITO was launched using:
RESULT:
Template:
2O08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102339 for 1485 contacts (-68.9/contact) +
2D Compatibility (PS) -19835 + (NN) -11484 + (LL) 152
1D Compatibility (HY) -17200 + (ID) 3900
Total energy: -154606.0 ( -104.11 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_2O08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O08-query.scw
PDB file :
Tito_Scwrl_2O08.pdb
: