Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
4LZA Chain:A ((25-195))
--LEEIKMMIREIPDFPKKGIKFKDITPVLKDAKAFNYSIEMLAKALEGRKFDLIAAPEARGFLFGAPLAYRLGVGFVPVRKPGKLPAETLSYEYE----TDSLEIHKDAVLEGQRVVIVDDLLATGGTIYASAKLVESLGGIVDSIIFLTELTFLDGRKKLDGYDIISLIKF
General information:
TITO was launched using:
RESULT:
Template:
4LZA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147300 for 1307 contacts (-112.7/contact) +
2D Compatibility (PS) -17631 + (NN) -409 + (LL) 512
1D Compatibility (HY) -18000 + (ID) 4400
Total energy: -187228.0 ( -143.25 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4LZA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LZA-query.scw
PDB file :
Tito_Scwrl_4LZA.pdb
: