Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPF-SFQRLEGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEA-DLTSDAYIKLALQLMTK
2ZTD Chain:A ((17-210))
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLR-QGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVG---------------------AVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129972 for 1301 contacts (-99.9/contact) +
2D Compatibility (PS) -19953 + (NN) -10758 + (LL) 1856
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -170827.0 ( -131.30 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTD-query.scw
PDB file :
Tito_Scwrl_2ZTD.pdb
: