Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQMVDLINQLR-PDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLLEKEDIEP--------PKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDPVAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK
3Q9L Chain:A ((2-258))
-ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN-LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEE----------------
General information:
TITO was launched using:
RESULT:
Template:
3Q9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167285 for 2222 contacts (-75.3/contact) +
2D Compatibility (PS) -26173 + (NN) -2693 + (LL) 1524
1D Compatibility (HY) -23600 + (ID) 5550
Total energy: -223777.0 ( -100.71 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9L-query.scw
PDB file :
Tito_Scwrl_3Q9L.pdb
: