Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVASDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
3L86 Chain:A ((36-279))
-KDIIVIKIGGVASQQLSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLL-TGTLITAD----
General information:
TITO was launched using:
RESULT:
Template:
3L86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172896 for 2062 contacts (-83.8/contact) +
2D Compatibility (PS) -26839 + (NN) -7308 + (LL) 480
1D Compatibility (HY) -26000 + (ID) 4800
Total energy: -237363.0 ( -115.11 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3L86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L86-query.scw
PDB file :
Tito_Scwrl_3L86.pdb
: