Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQ----TGGLCPINWQPGEKTIV
3SBC Chain:I ((25-200))
-----VQKQAPTFKKTAVV-DGVFDEVSLDKY--KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI-
General information:
TITO was launched using:
RESULT:
Template:
3SBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127944 for 1384 contacts (-92.4/contact) +
2D Compatibility (PS) -18473 + (NN) -6960 + (LL) 1076
1D Compatibility (HY) -17200 + (ID) 4600
Total energy: -174101.0 ( -125.80 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3SBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SBC-query.scw
PDB file :
Tito_Scwrl_3SBC.pdb
: