Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKICGLKKAVDVAAAVENGADMIGFVF-AKSKRQVTVDEAHELAKNIPAGVKKVGVFVNPTEEELTAAIKGVPLDIVQLHGQEPAEQANRTDAE--VIKAFPVKDGKLPDNINDYPNAYILLDAPAEEYEGGSGKTFDWDKI--DRDLLTKNKLIIAGGLNAQNVQEAIKRFEPYAVDISSGVET-NGEKDPQKIKCFIKTAKGVE
1NSJ Chain:A ((4-205))
--VKICGITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEY-GGSGKTFDWSLILPYRDRF--RYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHDSIKMFIKNAKGL-
General information:
TITO was launched using:
RESULT:
Template:
1NSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105380 for 1631 contacts (-64.6/contact) +
2D Compatibility (PS) -21572 + (NN) -11346 + (LL) 736
1D Compatibility (HY) -16400 + (ID) 4600
Total energy: -158562.0 ( -97.22 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_1NSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSJ-query.scw
PDB file :
Tito_Scwrl_1NSJ.pdb
: