Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MILLIDNYDSFTFNLEQYLAEF-SEVVVKRNDAADLIKIAAL-ADGIVLSPGPGKP---SDAGLLEEVVAKFA-KEKPLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMR---QTAGAIFANLPEE--MPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI
1QDL Chain:B ((1-195))
MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGK-RTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIA--KEFKATRYHSLVVD--EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV--------------
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134985 for 1622 contacts (-83.2/contact) +
2D Compatibility (PS) -19467 + (NN) -3202 + (LL) 724
1D Compatibility (HY) -19600 + (ID) 3900
Total energy: -180430.0 ( -111.24 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: