Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKGLLITVMLMVMLALGACSSSESKEDQWSRIKKDKEVVIGLDDSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWNGYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAKKPEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNIITGGFDATDFAVGMRKSDKELQKKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ |
| 3VVF Chain:A ((20-256)) | --------------------GGSEFQVRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGP-RTAKDLQGKVVGVQVGTTYMEAAQKIPGI-------KEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER-VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51877 for 1984 contacts (-26.1/contact) +
2D Compatibility (PS) -26077 + (NN) -12644 + (LL) 3644
1D Compatibility (HY) -14800 + (ID) 3250
Total energy: -105004.0 ( -52.93 by residue)
QMean score : 0.514
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