Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFAVIQFPGSNCDLDMLHAIR----DSLGEEAEYIWHAETSLAGFDAVLLPGGFSYGDYLRTGAIAKFSSIMPEVLR------FAEMGKPVLGVCNGFQILTEIG-LLPGA-----LIRNNNLHFICKTVPLRVANASTMFTELYEEGEIIQVPVAHGEGNYYCDDETLLKLKENNQIVF------------TYDSVNPNGSRADIAGIVNERGNVLGMMPHPERAVEEIIGGTDGLRLFESVVKAWKEEQVNA
3UGJ Chain:A ((1049-1283))
-KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMV-GSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPA-NPNGSPNGITAVTTENGRVTIMMPHPE-------------RVFRTVANSWHPE----
General information:
TITO was launched using:
RESULT:
Template:
3UGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71830 for 1659 contacts (-43.3/contact) +
2D Compatibility (PS) -22268 + (NN) -6786 + (LL) 1568
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -115966.0 ( -69.90 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_3UGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UGJ-query.scw
PDB file :
Tito_Scwrl_3UGJ.pdb
: