Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFMELKVAKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA
1TWJ Chain:A ((1-80))
MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKEMCEKLLANTVIEDYRYEVEE-
General information:
TITO was launched using:
RESULT:
Template:
1TWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31465 for 462 contacts (-68.1/contact) +
2D Compatibility (PS) -8369 + (NN) -1744 + (LL) 144
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -56134.0 ( -121.50 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1TWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWJ-query.scw
PDB file :
Tito_Scwrl_1TWJ.pdb
: