Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLLKNYPLTDKQKTWLKEWSDSK
4MCB Chain:B ((1-239))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGA-KVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKE-----
General information:
TITO was launched using:
RESULT:
Template:
4MCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147132 for 1738 contacts (-84.7/contact) +
2D Compatibility (PS) -25686 + (NN) -7019 + (LL) -52
1D Compatibility (HY) -23600 + (ID) 5450
Total energy: -208939.0 ( -120.22 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_4MCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCB-query.scw
PDB file :
Tito_Scwrl_4MCB.pdb
: