Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMVK
3FIJ Chain:A ((3-244))
LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM--
General information:
TITO was launched using:
RESULT:
Template:
3FIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99505 for 1952 contacts (-51.0/contact) +
2D Compatibility (PS) -23093 + (NN) -3299 + (LL) 1428
1D Compatibility (HY) -30000 + (ID) 11000
Total energy: -165469.0 ( -84.77 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3FIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FIJ-query.scw
PDB file :
Tito_Scwrl_3FIJ.pdb
: