Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLLD-PVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK
1EMW Chain:A ((1-88))
-MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQ--EAREGA
General information:
TITO was launched using:
RESULT:
Template:
1EMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30011 for 594 contacts (-50.5/contact) +
2D Compatibility (PS) -9154 + (NN) -4356 + (LL) 384
1D Compatibility (HY) -4400 + (ID) 2050
Total energy: -49587.0 ( -83.48 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_1EMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMW-query.scw
PDB file :
Tito_Scwrl_1EMW.pdb
: