Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTFFKKLKDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETVMELVDTLRREVQLRNISDPKDVQEVIVEKLVEIYQGDEKEDEALHIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYVYGLFADMVDNEK
1VMA Chain:A ((19-306))---------------------LKKGLQKTKETFFGRVVKLL-KGKKLDDETREELEELLIQADVGVETTEYILERLEEK--------DGDALESLKEIILEILNFDTK----LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE------


General information:
TITO was launched using:
RESULT:

Template: 1VMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168683 for 2550 contacts (-66.2/contact) +
2D Compatibility (PS) -31738 + (NN) -19564 + (LL) 2820
1D Compatibility (HY) -26800 + (ID) 7900
Total energy: -251865.0 ( -98.77 by residue)
QMean score : 0.584

(partial model without unconserved sides chains):
PDB file : Tito_1VMA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VMA-query.scw
PDB file : Tito_Scwrl_1VMA.pdb: