Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLGFPKVRQFIAKSLAEKIKQTFGEIDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGKQLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNP--EKWGK
4RV4 Chain:C ((24-231))
-AMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYV------------IEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAW--
General information:
TITO was launched using:
RESULT:
Template:
4RV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147252 for 1627 contacts (-90.5/contact) +
2D Compatibility (PS) -21490 + (NN) -8881 + (LL) 352
1D Compatibility (HY) -21600 + (ID) 5850
Total energy: -204721.0 ( -125.83 by residue)
QMean score : 0.709
(partial model without unconserved sides chains):
PDB file :
Tito_4RV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV4-query.scw
PDB file :
Tito_Scwrl_4RV4.pdb
: