Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLCENENAYRRRNSGNLEIEMSEITLRNRKPKRKIGKWIAIILGIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLTGKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKKPKKILHVNLGMEKETPIWEVAYLDKNDKLNYFDINFETGEWYREIENL
2GU3 Chain:A ((9-136))
----------------------------------------------------------------KEEGHEAAAAEAKKETDLAHVDQVETFVG-KEKYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTGKILKNITP-
General information:
TITO was launched using:
RESULT:
Template:
2GU3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32758 for 954 contacts (-34.3/contact) +
2D Compatibility (PS) -13837 + (NN) -4520 + (LL) 5928
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -54037.0 ( -56.64 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_2GU3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GU3-query.scw
PDB file :
Tito_Scwrl_2GU3.pdb
: