Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRTMMNGKIHRATVTEANLNY-VGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTDEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL
1PYQ Chain:B ((18-133))
MIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK------------
General information:
TITO was launched using:
RESULT:
Template:
1PYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83152 for 853 contacts (-97.5/contact) +
2D Compatibility (PS) -13058 + (NN) -4988 + (LL) 1188
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -112960.0 ( -132.43 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_1PYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PYQ-query.scw
PDB file :
Tito_Scwrl_1PYQ.pdb
: