Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFKQKMADKTTGFV--YVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
3VFI Chain:A ((2-102))
-----------------------------------------LRSLSDSDFQLEVRQHPDPIIIMFTGS-WCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDA-EKT-------MAELNIRTLPSLALFVDGMIREVFSGTMNKSDLRYWIN--------
General information:
TITO was launched using:
RESULT:
Template:
3VFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25132 for 677 contacts (-37.1/contact) +
2D Compatibility (PS) -10606 + (NN) -5173 + (LL) 4768
1D Compatibility (HY) -8800 + (ID) 1100
Total energy: -46043.0 ( -68.01 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_3VFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VFI-query.scw
PDB file :
Tito_Scwrl_3VFI.pdb
: