Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLMRVQK------GTNVLDVCCGTADWSIMMAEEI-----GPEGHVTGLDFSENMLKVGREKVKEADLH----NVELIHGNAMELPFPD-NSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRYISHSGGASATHFGFKKKEQ
4OBX Chain:A ((23-256))
--------------SVANRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQWAK-VLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIK----
General information:
TITO was launched using:
RESULT:
Template:
4OBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117948 for 1797 contacts (-65.6/contact) +
2D Compatibility (PS) -23597 + (NN) -9941 + (LL) 1924
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -167762.0 ( -93.36 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4OBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OBX-query.scw
PDB file :
Tito_Scwrl_4OBX.pdb
: