Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERLQKVIA-NAGITSRRKAEKLIQEGKVTVNGKVVTELGVKVSGTERIEVEGIQLTK-EEHRYFLFYKPRGTVSAVTDDKGRTTVADYFADIP--ERLYPVGRLDYDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVVIDGRK--TAPAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLNL-RGLNAGERRELSHHEVKQLKTEARFGKNKK
1VIO Chain:A ((4-232))
--RLDKFIAENVGLT-RSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCS-NDD--YPTIYQFF-DYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEIL------DDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKL-----------
General information:
TITO was launched using:
RESULT:
Template:
1VIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98750 for 1635 contacts (-60.4/contact) +
2D Compatibility (PS) -23612 + (NN) -7391 + (LL) 1096
1D Compatibility (HY) -18400 + (ID) 4300
Total energy: -151357.0 ( -92.57 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1VIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIO-query.scw
PDB file :
Tito_Scwrl_1VIO.pdb
: