Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAKKPLFEVIASEIKDSINRDEYKTGMLMPNETALQEIFSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTSQNILEMTGVMKTDTNENLKKDIKDFYIRKAGKFYAEKFGIKENELVYSIKFVQKSENGVTLDRLILPLSLYPDLQAKDFQIINIIELVNSGKYKLFELEQELQLILAGNEQIKNMHINENDPVFKLSSVFYAENEMPIAIQYHYEDAESTKYVVDFN
3EDP Chain:A ((7-236))
---KKPLFEVIASKIKDSINRDEYKTG--MPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQNILEMTGVMKN-----LKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFVQKSEHGATLDRLILPLGLYPDLQAKDFQIINIIELVNSGKYKLFELEQELQLILAGNEQIKNMHLNENDPVFKLSSVFYAENDMPIAIQYHYEDAESTKYVVDFN
General information:
TITO was launched using:
RESULT:
Template:
3EDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89103 for 1632 contacts (-54.6/contact) +
2D Compatibility (PS) -23834 + (NN) -2557 + (LL) 484
1D Compatibility (HY) -33600 + (ID) 10600
Total energy: -159210.0 ( -97.56 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3EDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EDP-query.scw
PDB file :
Tito_Scwrl_3EDP.pdb
: