Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNKVPASFNKWIEKVKTTFPENEKLHRMFEKCFTNTYTTTLQETEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTKCILHDPYANAFNKSANGAGF-QNDKTAMTNLVWERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEFRKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPSDDACMYGYLVPSNMFLVVVMDYVQEI-AATFYPEDKELPKESSDLRKEVAAGIETYAKQVHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAATYLGFCEKTDPAYQATRKLILSRENPYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAILEMLIAGDGGTDYMHEGVNASNPAEFTRDWFAWSNAMFSEFVLSLCGVYVKGSPLSK |
3QPF Chain:A ((10-425)) | ----------EWLDEVAERAKDYPEWVDVFERCYTDTLDNTVEILEDGSTFVLTGDIPAMWLRDSTAQLRPYLHVAKRDALLRQTIAGLVKRQMTLVLKDPYANSFNIEENWKGHHETDHTDLNGWIWERKYEVDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQDH-KNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTWSAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYAYTTNSKGEKIYAFEVDGLGNASIMDDPNVPSLLAAPYLGYCSVDDEVYQATRRTILSSENPYFYQGEYASGLGSSHTFYRYIWPIALSIQGLTTRDKAEKKFLLDQLVACDGGTGVMHESFHVDDPTLYSREWFSWANMMFCELVLDYLDI--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3QPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -208207 for 3733 contacts (-55.8/contact) +
2D Compatibility (PS) -44763 + (NN) -29571 + (LL) 736
1D Compatibility (HY) -43600 + (ID) 10350
Total energy: -335755.0 ( -89.94 by residue)
QMean score : 0.488
|
|
|