Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDWLTNSTAIIIILPVVVFI----------LTMFFSSFKLKKSQRR--------IMLAADLSTIFLIIAVHFFMIVLFNRSFLLYILLFL---FILGIV-IVVTAAKKEGEIQFRK-ILRGYWRLCFFIFALLYVALYLYGIVYSLVLMF
3J9P Chain:D ((1215-1386))
VLEWIIYTTGIIFVLPLFVEIPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSF--YILLNLQDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLM-
General information:
TITO was launched using:
RESULT:
Template:
3J9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95838 for 671 contacts (-142.8/contact) +
2D Compatibility (PS) -12339 + (NN) -4280 + (LL) 484
1D Compatibility (HY) -18000 + (ID) 1950
Total energy: -131923.0 ( -196.61 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3J9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J9P-query.scw
PDB file :
Tito_Scwrl_3J9P.pdb
: