Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKTKRKMIYETFMLILILLSLALLPYRNNFTFILNWIIWVIFTLDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVPIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKPTNSSTQRANKITQLISETPDLTKEEIAVVEQFLTLRKKELADENTKSDSE
4H33 Chain:A ((12-102))
-----------------------------------------------------------------------------------------------------------RSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPT-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4H33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74437 for 578 contacts (-128.8/contact) +
2D Compatibility (PS) -9436 + (NN) -1971 + (LL) 14324
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -94420.0 ( -163.36 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4H33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H33-query.scw
PDB file :
Tito_Scwrl_4H33.pdb
: